Function to extract ground-truth from attractor-based simulation made with the function attractor_simulation

This function extracts the ground-truth values for functional spatial effect values, replicate random effect values, and indicators for spatially variable genes (SVGs) and genes with functional spatial effects (FSEs) from a simulation object created by the attractor_simulation function.

Usage

attractor_simulation_ground_truth(sim)

Arguments

sim

A list object returned by the attractor_simulation function, containing the simulation data and parameters.

Value

A list containing the following components: fse_true, ran_true, SVGs, and FSEs.